PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G208300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 388aa    MW: 42539 Da    PI: 5.7712
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G208300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.1e-32811742102
                         HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
        HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                         F+ k+ye++ d++++ ++sw     gnsfvv+d++ +a  +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++         weF+h+sF +g+
  Sevir.5G208300.1.p  81 FVAKTYEMVADAATDAVVSWApgGAGNSFVVWDPQALAVGLLPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFAHESFLAGQ 162
                         9********************55556*****************************************999.........************ PP

                         XXXXXXXXXXXX CS
        HSF_DNA-bind  91 kellekikrkks 102
                         k+ll+kikr++ 
  Sevir.5G208300.1.p 163 KHLLRKIKRRRA 174
                         *********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5177172IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.7E-3478172IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.12E-3078172IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-1781104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2881172IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-17121133IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340122146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-17134146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MASSSSSSSC PLAPRPSGGS QRTTTRASGG GLGLGGEAMA RCAAAVKREP EPEPWAGEAE  60
AAGSVAVLPR PVEEPPMPAP FVAKTYEMVA DAATDAVVSW APGGAGNSFV VWDPQALAVG  120
LLPRFFKHAN FASFIRQLNI YGFRKVNPDR WEFAHESFLA GQKHLLRKIK RRRAPKPQME  180
AHPRNGASIC FKQPKDSGEV ESLKRDRAAL RAEVLTLKQQ YSSCKSQLVA LEERILNNER  240
NQQKAIAFFA KVLSNPTFVQ QVLLNYAANK ELYSTAKRKR LMENEEQRVG TLKNGLEPTL  300
ATEASASAAS SDGSAVAKHE PMPEWNYQEM DNIWEDVWDE LDAIPGAEMD QEDKAAAGFE  360
VEEFTGRPCG WVDDCPYLVE QMQFVEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-228117220120Heat shock factor protein 1
5d5v_D2e-228117229129Heat shock factor protein 1
5d5v_B2e-228117229129Heat shock factor protein 1
5d5u_B2e-228117229129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969018.10.0PREDICTED: heat stress transcription factor A-6a-like
SwissprotQ657C01e-152HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLK3XRR10.0K3XRR1_SETIT; Uncharacterized protein
STRINGSi004605m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-67heat shock transcription factor A2